Trips-Viz: a transcriptome browser for exploring Ribo-Seq data
نویسندگان
چکیده
منابع مشابه
GWIPS-viz: development of a ribo-seq genome browser
We describe the development of GWIPS-viz (http://gwips.ucc.ie), an online genome browser for viewing ribosome profiling data. Ribosome profiling (ribo-seq) is a recently developed technique that provides genome-wide information on protein synthesis (GWIPS) in vivo. It is based on the deep sequencing of ribosome-protected messenger RNA (mRNA) fragments, which allows the ribosome density along al...
متن کاملsystemPipeR Workflow for Ribo-Seq and polyRibo-Seq Experiments
7 Genomic read coverage along transripts or CDSs 9 7.1 Binned CDS coverage to compare many transcripts . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 9 7.2 Coverage upstream and downstream of start and stop codons . . . . . . . . . . . . . . . . . . . . . . . . 9 7.3 Combined coverage for both binned CDS and start/stop codons . . . . . . . . . . . . . . . . . . . . . . 10 7.4 Nucleot...
متن کاملGWIPS-viz: 2018 update
The GWIPS-viz browser (http://gwips.ucc.ie/) is an on-line genome browser which is tailored for exploring ribosome profiling (Ribo-seq) data. Since its publication in 2014, GWIPS-viz provides Ribo-seq data for an additional 14 genomes bringing the current total to 23. The integration of new Ribo-seq data has been automated thereby increasing the number of available tracks to 1792, a 10-fold inc...
متن کاملRiboProfiling: a Bioconductor package for standard Ribo-seq
The ribosome profiling technique (Ribo-seq) allows the selective sequencing of translated RNA regions. Recently, the analysis of genomic sequences associated to Ribo-seq reads has been widely employed to assess their coding potential. These analyses led to the identification of differentially translated transcripts under different experimental conditions, and/or ribosome pausing on codon motifs...
متن کاملRiboProfiling: a Bioconductor package for standard Ribo-seq pipeline processing
The ribosome profiling technique (Ribo-seq) allows the selective sequencing of translated RNA regions. Recently, the analysis of genomic sequences associated to Ribo-seq reads has been widely employed to assess their coding potential. These analyses led to the identification of differentially translated transcripts under different experimental conditions, and/or ribosome pausing on codon motifs...
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ژورنال
عنوان ژورنال: Nucleic Acids Research
سال: 2018
ISSN: 0305-1048,1362-4962
DOI: 10.1093/nar/gky842